Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006444.1 Corchorus olitorius cultivar O-4 contig06469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 687

Length: 1145
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.32


Found at i:390 original size:10 final size:9

Alignment explanation


    Indices: 360--388  Score: 58
    Period size: 9  Copynumber: 3.2  Consensus size: 9

        350 TTCTCTCTTC

                     
        360 TTCTTTTTT
          1 TTCTTTTTT

                     
        369 TTCTTTTTT
          1 TTCTTTTTT

                     
        378 TTCTTTTTT
          1 TTCTTTTTT

              
        387 TT
          1 TT

        389 TCGGTTCGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90


Consensus pattern (9 bp):   
TTCTTTTTT
Done.