Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006446.1 Corchorus olitorius cultivar O-4 contig06471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2045
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36


Found at i:1635 original size:2 final size:2

Alignment explanation


    Indices: 1623--1651  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

       1613 TAGCTTTTGC

                                                        
       1623 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1652 TATGACATAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   25  0.96

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.