Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000645.1 Corchorus olitorius cultivar O-4 contig00645, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:300 original size:12 final size:12

Alignment explanation


    Indices: 285--317  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        275 TAAGAATTAT

                *       
        285 GAAAAGAACAAG
          1 GAAAGGAACAAG

                        
        297 GAAAGGAACAAG
          1 GAAAGGAACAAG

                     
        309 GAAAGGAAC
          1 GAAAGGAAC

        318 TATATTCAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.61, C:0.09, G:0.30, T:0.00


Consensus pattern (12 bp):   
GAAAGGAACAAG

Found at i:448 original size:11 final size:11

Alignment explanation


    Indices: 432--456  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        422 ATTTACGAAC

                       
        432 TCATTGTACTT
          1 TCATTGTACTT

                       
        443 TCATTGTACTT
          1 TCATTGTACTT

               
        454 TCA
          1 TCA

        457 GTGGAGCTTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52


Consensus pattern (11 bp):   
TCATTGTACTT
Done.