Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006450.1 Corchorus olitorius cultivar O-4 contig06475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41


Found at i:673 original size:3 final size:3

Alignment explanation


    Indices: 665--699  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        655 AGTAAATTCT

                                  *                       
        665 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TT
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT

        700 GCATCAGAGA


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71


Consensus pattern (3 bp):   
TTC

Found at i:1007 original size:2 final size:2

Alignment explanation


    Indices: 1000--1024  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        990 CTTTAACTAG

                                                 
       1000 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       1025 G


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.