Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006452.1 Corchorus olitorius cultivar O-4 contig06477, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24


Found at i:535 original size:15 final size:15

Alignment explanation


    Indices: 494--537  Score: 70
    Period size: 15  Copynumber: 2.9  Consensus size: 15

        484 TGCTAGGGTG

                    *      
        494 AATGGTGCAAACAAC
          1 AATGGTGCGAACAAC

                           
        509 AATGGTGCGAACAAC
          1 AATGGTGCGAACAAC

                   *      
        524 AATGGTGTGAACAA
          1 AATGGTGCGAACAA

        538 TAACGGAAAC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.43, C:0.16, G:0.25, T:0.16


Consensus pattern (15 bp):   
AATGGTGCGAACAAC
Done.