Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006459.1 Corchorus olitorius cultivar O-4 contig06484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1088
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38


Found at i:798 original size:45 final size:45

Alignment explanation


    Indices: 734--835  Score: 186
    Period size: 45  Copynumber: 2.3  Consensus size: 45

        724 TTGTGCACTC

                                                         
        734 GGCAATCATGGAGCCAAAGCTCTCTTTGATCTCCTTAAAGCATTT
          1 GGCAATCATGGAGCCAAAGCTCTCTTTGATCTCCTTAAAGCATTT

                       *                                 
        779 GGCAATCATGGGGCCAAAGCTCTCTTTGATCTCCTTAAAGCATTT
          1 GGCAATCATGGAGCCAAAGCTCTCTTTGATCTCCTTAAAGCATTT

                *       
        824 GGCAGTCATGGA
          1 GGCAATCATGGA

        836 TTCTAACTTT


Statistics
Matches: 54,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  45   54  1.00

ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29


Consensus pattern (45 bp):   
GGCAATCATGGAGCCAAAGCTCTCTTTGATCTCCTTAAAGCATTT
Done.