Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000646.1 Corchorus olitorius cultivar O-4 contig00646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38


Found at i:583 original size:4 final size:4

Alignment explanation


    Indices: 574--598  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

        564 TTGAAAAAAT

                                           
        574 TTAA TTAA TTAA TTAA TTAA TTAA T
          1 TTAA TTAA TTAA TTAA TTAA TTAA T

        599 AAAAAGAAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (4 bp):   
TTAA

Done.