Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006460.1 Corchorus olitorius cultivar O-4 contig06485, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1118
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.38

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:896 original size:20 final size:21

Alignment explanation


    Indices: 866--904  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

        856 CTTACATAGG

                                 
        866 ATTACTGAAAAAGCTATACAT
          1 ATTACTGAAAAAGCTATACAT

                       *       
        887 ATTA-TGAAAATGCTATAC
          1 ATTACTGAAAAAGCTATAC

        905 TCTTATCAAT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20   13  0.76
  21    4  0.24

ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31


Consensus pattern (21 bp):   
ATTACTGAAAAAGCTATACAT

Found at i:962 original size:23 final size:23

Alignment explanation


    Indices: 930--977  Score: 78
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        920 CAATACTTTA

                 *                 
        930 GTTTCCTTTCCTCAATAATAAAG
          1 GTTTCATTTCCTCAATAATAAAG

                      *            
        953 GTTTCATTTCGTCAATAATAAAG
          1 GTTTCATTTCCTCAATAATAAAG

              
        976 GT
          1 GT

        978 AATTACAAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40


Consensus pattern (23 bp):   
GTTTCATTTCCTCAATAATAAAG
Done.