Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006467.1 Corchorus olitorius cultivar O-4 contig06492, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25


Found at i:603 original size:19 final size:21

Alignment explanation


    Indices: 567--605  Score: 64
    Period size: 19  Copynumber: 2.0  Consensus size: 21

        557 CACTCACAAA

                                 
        567 AAAAAACAGAAAATCTTTCTC
          1 AAAAAACAGAAAATCTTTCTC

                                
        588 AAAAAA-AGAAAA-CTTTCT
          1 AAAAAACAGAAAATCTTTCT

        606 GATTTACCAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  19    6  0.33
  20    6  0.33
  21    6  0.33

ACGTcount: A:0.56, C:0.15, G:0.05, T:0.23


Consensus pattern (21 bp):   
AAAAAACAGAAAATCTTTCTC
Done.