Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006468.1 Corchorus olitorius cultivar O-4 contig06493, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 815

Length: 1359
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:510 original size:21 final size:20

Alignment explanation


    Indices: 484--548  Score: 76
    Period size: 21  Copynumber: 3.1  Consensus size: 20

        474 AGGGATCGAG

                         *       
        484 CTGGGCGCTGAGCCTTGTCGC
          1 CTGGGCGCTGAGCATT-TCGC

                              *  
        505 CTGGGCGCTGAGGCATTTTGC
          1 CTGGGCGCTGA-GCATTTCGC

                              *  
        526 CTGGGCGCTGAGGCATTTTGC
          1 CTGGGCGCTGA-GCATTTCGC

              
        547 CT
          1 CT

        549 AGGTGCCCAG


Statistics
Matches: 41,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
  21   37  0.90
  22    4  0.10

ACGTcount: A:0.08, C:0.28, G:0.37, T:0.28


Consensus pattern (20 bp):   
CTGGGCGCTGAGCATTTCGC
Done.