Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006474.1 Corchorus olitorius cultivar O-4 contig06499, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2035
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31


Found at i:259 original size:21 final size:21

Alignment explanation


    Indices: 213--261  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        203 GGCTTGGAAT

                *                
        213 GGTGATGGCACGGGCATAACC
          1 GGTGGTGGCACGGGCATAACC

                           *  *  
        234 GGTGGTGGCACGGGCTTAGCC
          1 GGTGGTGGCACGGGCATAACC

                   
        255 GGTGGTG
          1 GGTGGTG

        262 TCACAGTGAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.14, C:0.20, G:0.47, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC
Done.