Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006483.1 Corchorus olitorius cultivar O-4 contig06508, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36


Found at i:106 original size:12 final size:11

Alignment explanation


    Indices: 83--119  Score: 51
    Period size: 12  Copynumber: 3.5  Consensus size: 11

         73 TACCTCGTAC

                       
         83 TATTATATTAT
          1 TATTATATTAT

                        
         94 TATTATCATTAT
          1 TATTAT-ATTAT

                       
        106 TATTA-ATTA-
          1 TATTATATTAT

                 
        115 TATTA
          1 TATTA

        120 GACTTAATAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
   9    5  0.20
  10    4  0.16
  11    6  0.24
  12   10  0.40

ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59


Consensus pattern (11 bp):   
TATTATATTAT
Done.