Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006499.1 Corchorus olitorius cultivar O-4 contig06524, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.35


Found at i:397 original size:24 final size:24

Alignment explanation


    Indices: 365--424  Score: 111
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        355 ATTAAAGTAT

                                    
        365 TGAAAATTTTCATTTTCAATGGTC
          1 TGAAAATTTTCATTTTCAATGGTC

                                   *
        389 TGAAAATTTTCATTTTCAATGGTT
          1 TGAAAATTTTCATTTTCAATGGTC

                        
        413 TGAAAATTTTCA
          1 TGAAAATTTTCA

        425 ATGCTTTTTC


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   35  1.00

ACGTcount: A:0.32, C:0.10, G:0.12, T:0.47


Consensus pattern (24 bp):   
TGAAAATTTTCATTTTCAATGGTC
Done.