Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000650.1 Corchorus olitorius cultivar O-4 contig00650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1122
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:101 original size:11 final size:11

Alignment explanation


    Indices: 85--110  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

         75 AGATAATTTC

                       
         85 TTTTCTTCTAG
          1 TTTTCTTCTAG

                       
         96 TTTTCTTCTAG
          1 TTTTCTTCTAG

                
        107 TTTT
          1 TTTT

        111 TTAGGCAAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69


Consensus pattern (11 bp):   
TTTTCTTCTAG

Found at i:904 original size:16 final size:16

Alignment explanation


    Indices: 872--916  Score: 65
    Period size: 16  Copynumber: 2.8  Consensus size: 16

        862 TTACTTTGCT

                             
        872 TTTGTTTTCTAGTTTAA
          1 TTTGTTTTCT-GTTTAA

                            
        889 TTTGTTTTCTGTTTAA
          1 TTTGTTTTCTGTTTAA

                         
        905 -TTGTCTTTCTGT
          1 TTTGT-TTTCTGT

        917 CAATCTCTTG


Statistics
Matches: 27,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    4  0.15
  16   13  0.48
  17   10  0.37

ACGTcount: A:0.11, C:0.09, G:0.13, T:0.67


Consensus pattern (16 bp):   
TTTGTTTTCTGTTTAA
Done.