Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006500.1 Corchorus olitorius cultivar O-4 contig06525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1653
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37


Found at i:490 original size:11 final size:11

Alignment explanation


    Indices: 474--521  Score: 50
    Period size: 11  Copynumber: 4.7  Consensus size: 11

        464 GAAGTTCGTG

                       
        474 TTTGAAGACCA
          1 TTTGAAGACCA

                    ** 
        485 TTTGAAGATAA
          1 TTTGAAGACCA

                       
        496 TTTGAAGA-C-
          1 TTTGAAGACCA

                       
        505 -TTGAAGACCA
          1 TTTGAAGACCA

                    
        515 -TTGAAGA
          1 TTTGAAGA

        522 TTTATTTAAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 5
        0.80            0.08        0.12

Matches are distributed among these distances:
   8    7  0.22
   9    1  0.03
  10    7  0.22
  11   17  0.53

ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29


Consensus pattern (11 bp):   
TTTGAAGACCA
Done.