Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006502.1 Corchorus olitorius cultivar O-4 contig06527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37


Found at i:296 original size:36 final size:36

Alignment explanation


    Indices: 249--318  Score: 113
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        239 GAGATTTTGG

                         *      *               
        249 AGAAATATGATAATCAAAATTACAAAAAATGTAACA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAACA

                                       *      
        285 AGAAATATGATAACCAAAATCACAAAAGATGTAA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAA

        319 GGTTATTGAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  36   31  1.00

ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCACAAAAAATGTAACA
Done.