Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006508.1 Corchorus olitorius cultivar O-4 contig06533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 873

Length: 1456
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32


Found at i:923 original size:4 final size:4

Alignment explanation


    Indices: 914--940  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

        904 TTTTCCTTTT

                                             
        914 ATTA ATTA ATTA ATTA ATTA ATTA ATT
          1 ATTA ATTA ATTA ATTA ATTA ATTA ATT

        941 TGTTTTTTTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (4 bp):   
ATTA

Done.