Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006510.1 Corchorus olitorius cultivar O-4 contig06535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36


Found at i:256 original size:15 final size:16

Alignment explanation


    Indices: 238--267  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        228 ATAAATAATA

                            
        238 ATATTATAAT-TAAAT
          1 ATATTATAATCTAAAT

                           
        253 ATATTATAATCTAAA
          1 ATATTATAATCTAAA

        268 AATAATTATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15   10  0.71
  16    4  0.29

ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43


Consensus pattern (16 bp):   
ATATTATAATCTAAAT
Done.