Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006511.1 Corchorus olitorius cultivar O-4 contig06536, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1015
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.22


Found at i:874 original size:21 final size:21

Alignment explanation


    Indices: 828--874  Score: 51
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        818 CAACAAAGAG

                    *    *       
        828 GGAGATGCTTCCTTCCTCCTA
          1 GGAGATGCCTCCTACCTCCTA

            *                     
        849 AGAGATGCCTCCTACCT-CTCA
          1 GGAGATGCCTCCTACCTCCT-A

                 
        870 GGAGA
          1 GGAGA

        875 CGTCACCTCC


Statistics
Matches: 21,  Mismatches: 4, Indels: 2
        0.78            0.15        0.07

Matches are distributed among these distances:
  20    2  0.10
  21   19  0.90

ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26


Consensus pattern (21 bp):   
GGAGATGCCTCCTACCTCCTA
Done.