Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006512.1 Corchorus olitorius cultivar O-4 contig06537, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37


Found at i:1189 original size:58 final size:57

Alignment explanation


    Indices: 1084--1197  Score: 174
    Period size: 58  Copynumber: 2.0  Consensus size: 57

       1074 ATAGCATCAT

                      *                               *              
       1084 GCCTCGGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAATATGTCACTCGATAA
          1 GCCTCGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAACATGTCACTCGATAA

                                       *            *           *    
       1141 GCCTCGGTCCGAAAACGTCTTTTTTTATGCATCTAATAAAGAACATGTCACTTGATA
          1 GCCTCGGTCCGAAAACGTC-TTTTTTAGGCATCTAATAAAAAACATGTCACTCGATA

       1198 TTTGATTAAT


Statistics
Matches: 51,  Mismatches: 5, Indels: 1
        0.89            0.09        0.02

Matches are distributed among these distances:
  57   18  0.35
  58   33  0.65

ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32


Consensus pattern (57 bp):   
GCCTCGGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAACATGTCACTCGATAA
Done.