Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006513.1 Corchorus olitorius cultivar O-4 contig06538, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.36


Found at i:344 original size:21 final size:21

Alignment explanation


    Indices: 315--354  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        305 AACAAAAACC

                        *        
        315 TTTTAAAATATTCTTTTTTCT
          1 TTTTAAAATATTATTTTTTCT

                *    *         
        336 TTTTCAAATTTTATTTTTT
          1 TTTTAAAATATTATTTTTT

        355 TAATATTAAC


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70


Consensus pattern (21 bp):   
TTTTAAAATATTATTTTTTCT
Done.