Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006515.1 Corchorus olitorius cultivar O-4 contig06540, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1598
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.34


Found at i:537 original size:93 final size:93

Alignment explanation


    Indices: 439--676  Score: 386
    Period size: 93  Copynumber: 2.5  Consensus size: 93

        429 AATAGGTATA

                                                                             
        439 TAAATAAAAAATAGAGTTTTTATTTGAGTAAAACTATAAAAGTATATTTAAAAATTCTAATATAA
          1 TAAATAAAAAATAGAGTTTTTATTTGAGTAAAACTATAAAAGTATATTTAAAAATTCTAATATAA

                                        
        504 AAGTATAATTAAATAGTTATAAGGATAT
         66 AAGTATAATTAAATAGTTATAAGGATAT

                                                                             
        532 TAAATAAAAAATAGAGTTTTTATTTGAGTAAAACTATAAAAGTATATTTAAAAATTCTAATATAA
          1 TAAATAAAAAATAGAGTTTTTATTTGAGTAAAACTATAAAAGTATATTTAAAAATTCTAATATAA

                                        
        597 AAGTATAATTAAATAGTTATAAGGATAT
         66 AAGTATAATTAAATAGTTATAAGGATAT

                                           *                    
        625 TAGATTTAATTAAATAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAAAGT
          1 T--A---AA-T--A-AAAAATAGAGTTTTTATTTGAGTAAAACTATAAAAGT

        677 TTAAACAATG


Statistics
Matches: 135,  Mismatches: 1, Indels: 9
        0.93            0.01        0.06

Matches are distributed among these distances:
  93   94  0.70
  95    1  0.01
  98    2  0.01
  99    1  0.01
 101    1  0.01
 102   36  0.27

ACGTcount: A:0.51, C:0.02, G:0.11, T:0.37


Consensus pattern (93 bp):   
TAAATAAAAAATAGAGTTTTTATTTGAGTAAAACTATAAAAGTATATTTAAAAATTCTAATATAA
AAGTATAATTAAATAGTTATAAGGATAT
Done.