Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006521.1 Corchorus olitorius cultivar O-4 contig06546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 777

Length: 1296
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21


Found at i:579 original size:12 final size:12

Alignment explanation


    Indices: 562--587  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        552 TTACAATCTA

                        
        562 ATCAATTTTTAT
          1 ATCAATTTTTAT

                        
        574 ATCAATTTTTAT
          1 ATCAATTTTTAT

              
        586 AT
          1 AT

        588 TATATATTGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58


Consensus pattern (12 bp):   
ATCAATTTTTAT
Done.