Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006532.1 Corchorus olitorius cultivar O-4 contig06557, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2776
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:2381 original size:29 final size:30

Alignment explanation


    Indices: 2336--2408  Score: 114
    Period size: 29  Copynumber: 2.5  Consensus size: 30

       2326 CTTTATTTCC

                                           
       2336 CATTTTGGTCATCTTTTT-ATGTCCA-GGGG
          1 CATTTTGGTCAT-TTTTTCATGTCCAGGGGG

                                  *       
       2365 CATTTTGGTCATTTTTTCATGTTCAGGGGG
          1 CATTTTGGTCATTTTTTCATGTCCAGGGGG

                          
       2395 CATTTTGGTCATTT
          1 CATTTTGGTCATTT

       2409 CAAGTGTACT


Statistics
Matches: 41,  Mismatches: 1, Indels: 3
        0.91            0.02        0.07

Matches are distributed among these distances:
  28    5  0.12
  29   18  0.44
  30   18  0.44

ACGTcount: A:0.14, C:0.15, G:0.23, T:0.48


Consensus pattern (30 bp):   
CATTTTGGTCATTTTTTCATGTCCAGGGGG

Done.