Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006543.1 Corchorus olitorius cultivar O-4 contig06568, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 675

Length: 1126
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27


Found at i:775 original size:17 final size:18

Alignment explanation


    Indices: 734--775  Score: 50
    Period size: 17  Copynumber: 2.4  Consensus size: 18

        724 TAGTGCAGAT

                        * *   
        734 TGAAGATTTCGTTTTTCC
          1 TGAAGATTTCGTATGTCC

              *               
        752 TGCAGATTTC-TATGTCC
          1 TGAAGATTTCGTATGTCC

                   
        769 TGAAGAT
          1 TGAAGAT

        776 GAGTGAAGAC


Statistics
Matches: 20,  Mismatches: 4, Indels: 1
        0.80            0.16        0.04

Matches are distributed among these distances:
  17   11  0.55
  18    9  0.45

ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43


Consensus pattern (18 bp):   
TGAAGATTTCGTATGTCC
Done.