Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006545.1 Corchorus olitorius cultivar O-4 contig06570, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37


Found at i:749 original size:57 final size:56

Alignment explanation


    Indices: 661--775  Score: 194
    Period size: 57  Copynumber: 2.0  Consensus size: 56

        651 TATGCGTTTC

                                                                     
        661 CTTTCACACAATAAATGTTATAATAAATCCTATCCCTCCTATCTCTACTTAATTATT
          1 CTTTCACACAATAAATGTTATAATAAATCCTATCCC-CCTATCTCTACTTAATTATT

                    *   *         *                                 
        718 CTTTCACATAATTAATGTTATATTAAATCCTATCCCCCTATCTCTACTTAATTATT
          1 CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT

              
        774 CT
          1 CT

        776 ACAAAATAAA


Statistics
Matches: 55,  Mismatches: 3, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  56   22  0.40
  57   33  0.60

ACGTcount: A:0.31, C:0.24, G:0.02, T:0.43


Consensus pattern (56 bp):   
CTTTCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATT
Done.