Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006549.1 Corchorus olitorius cultivar O-4 contig06574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1175
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.33


Found at i:150 original size:51 final size:50

Alignment explanation


    Indices: 26--124  Score: 153
    Period size: 51  Copynumber: 1.9  Consensus size: 50

         16 ATCCAAGTTT

                       *                                        
         26 TTAACTCAAAGGTGACAGTTTTTATTTACAAATTGCCTCAAAATTCAATTGC
          1 TTAA-TCAAAGAT-ACAGTTTTTATTTACAAATTGCCTCAAAATTCAATTGC

               *                                           
         78 TTACTCAAAGATGACAGTTTTTATTTACAAATTGCCTCAAAATTCAA
          1 TTAATCAAAGAT-ACAGTTTTTATTTACAAATTGCCTCAAAATTCAA

        125 AGTTTTTAAT


Statistics
Matches: 45,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  51   42  0.93
  52    3  0.07

ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36


Consensus pattern (50 bp):   
TTAATCAAAGATACAGTTTTTATTTACAAATTGCCTCAAAATTCAATTGC
Done.