Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006554.1 Corchorus olitorius cultivar O-4 contig06579, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 682

Length: 1137
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42


Found at i:350 original size:13 final size:13

Alignment explanation


    Indices: 332--356  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        322 TTGGAATTCC

                         
        332 AAATAATATTTAT
          1 AAATAATATTTAT

                        
        345 AAATAATATTTA
          1 AAATAATATTTA

        357 GAATATTGAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44


Consensus pattern (13 bp):   
AAATAATATTTAT
Done.