Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006555.1 Corchorus olitorius cultivar O-4 contig06580, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.29


Found at i:473 original size:22 final size:22

Alignment explanation


    Indices: 448--489  Score: 57
    Period size: 22  Copynumber: 1.9  Consensus size: 22

        438 TTTTGGAGTG

                                  
        448 TTCCATTCTTGTTTCTTTTTAT
          1 TTCCATTCTTGTTTCTTTTTAT

                *  *  *         
        470 TTCCCTTTTTTTTTCTTTTT
          1 TTCCATTCTTGTTTCTTTTT

        490 TTTAGAACAA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  22   17  1.00

ACGTcount: A:0.05, C:0.19, G:0.02, T:0.74


Consensus pattern (22 bp):   
TTCCATTCTTGTTTCTTTTTAT
Done.