Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006557.1 Corchorus olitorius cultivar O-4 contig06582, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8642
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:1419 original size:17 final size:17

Alignment explanation


    Indices: 1397--1430  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1387 CATTAATAAA

                             
       1397 TTTTATTTTTAACTTGC
          1 TTTTATTTTTAACTTGC

                      *      
       1414 TTTTATTTTTTACTTGC
          1 TTTTATTTTTAACTTGC

       1431 AACATGACCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68


Consensus pattern (17 bp):   
TTTTATTTTTAACTTGC

Found at i:3010 original size:27 final size:26

Alignment explanation


    Indices: 2980--3037  Score: 64
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       2970 TGTCGTGTTG

                                        
       2980 GTTTATACTCCATT-CGGAGTTCATGTA
          1 GTTTATACT-C-TTGCGGAGTTCATGTA

                *        *         *  
       3007 GTTTTTACTCTTGTGGAGTTCATTTA
          1 GTTTATACTCTTGCGGAGTTCATGTA

                 
       3033 GTTTA
          1 GTTTA

       3038 GTTTATAATC


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  25    2  0.08
  26   16  0.62
  27    8  0.31

ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48


Consensus pattern (26 bp):   
GTTTATACTCTTGCGGAGTTCATGTA
Done.