Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006567.1 Corchorus olitorius cultivar O-4 contig06592, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 619

Length: 1033
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29


Found at i:982 original size:30 final size:31

Alignment explanation


    Indices: 943--1002  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 31

        933 CAATTCTTCC

                *                          
        943 TCTTGAAATAAATCTTC-AATGGTCTTCAAG
          1 TCTTCAAATAAATCTTCAAATGGTCTTCAAG

                       *                  
        973 TCTTCAAATAAGTCTTCAAATGGTCTTCAA
          1 TCTTCAAATAAATCTTCAAATGGTCTTCAA

       1003 ACACGAACTT


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  30   15  0.56
  31   12  0.44

ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37


Consensus pattern (31 bp):   
TCTTCAAATAAATCTTCAAATGGTCTTCAAG

Found at i:1000 original size:11 final size:11

Alignment explanation


    Indices: 955--1003  Score: 52
    Period size: 12  Copynumber: 4.7  Consensus size: 11

        945 TTGAAATAAA

                       
        955 TCTTC-AATGG
          1 TCTTCAAATGG

                       
        965 TCTTC-AA--G
          1 TCTTCAAATGG

                      * 
        973 TCTTCAAATAAG
          1 TCTTCAAAT-GG

                       
        985 TCTTCAAATGG
          1 TCTTCAAATGG

                    
        996 TCTTCAAA
          1 TCTTCAAA

       1004 CACGAACTTC


Statistics
Matches: 34,  Mismatches: 1, Indels: 7
        0.81            0.02        0.17

Matches are distributed among these distances:
   8    6  0.18
   9    2  0.06
  10    7  0.21
  11    9  0.26
  12   10  0.29

ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37


Consensus pattern (11 bp):   
TCTTCAAATGG
Done.