Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006571.1 Corchorus olitorius cultivar O-4 contig06596, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1478
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33


Found at i:717 original size:18 final size:18

Alignment explanation


    Indices: 694--731  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        684 CTAGAACATC

                              
        694 TGTTAGATCTTTGTCAGG
          1 TGTTAGATCTTTGTCAGG

                              
        712 TGTTAGATCTTTGTCAGG
          1 TGTTAGATCTTTGTCAGG

              
        730 TG
          1 TG

        732 ATGAATCTAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.16, C:0.11, G:0.29, T:0.45


Consensus pattern (18 bp):   
TGTTAGATCTTTGTCAGG
Done.