Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006573.1 Corchorus olitorius cultivar O-4 contig06598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1212
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38


Found at i:732 original size:29 final size:29

Alignment explanation


    Indices: 692--757  Score: 89
    Period size: 29  Copynumber: 2.3  Consensus size: 29

        682 GCGTTTTTTC

                             *            
        692 TAAAAAAATTTTGTTTTGTGTT-TGCGTCA
          1 TAAAAAAATTTTGTTTTCT-TTCTGCGTCA

                   *    *                
        721 TAAAAAATTTTTTTTTTCTTTCTGCGTCA
          1 TAAAAAAATTTTGTTTTCTTTCTGCGTCA

                    
        750 TAAAAAAA
          1 TAAAAAAA

        758 AGTTTTCGGT


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  28    2  0.06
  29   30  0.94

ACGTcount: A:0.33, C:0.09, G:0.11, T:0.47


Consensus pattern (29 bp):   
TAAAAAAATTTTGTTTTCTTTCTGCGTCA

Found at i:924 original size:13 final size:13

Alignment explanation


    Indices: 902--934  Score: 57
    Period size: 13  Copynumber: 2.5  Consensus size: 13

        892 CTACTAACAA

                         
        902 TTTTTCTTTTGAG
          1 TTTTTCTTTTGAG

                 *       
        915 TTTTTTTTTTGAG
          1 TTTTTCTTTTGAG

                   
        928 TTTTTCT
          1 TTTTTCT

        935 AGGAAGCTGC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.06, C:0.06, G:0.12, T:0.76


Consensus pattern (13 bp):   
TTTTTCTTTTGAG
Done.