Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000658.1 Corchorus olitorius cultivar O-4 contig00658, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1992
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36


Found at i:1453 original size:78 final size:78

Alignment explanation


    Indices: 1322--1465  Score: 270
    Period size: 78  Copynumber: 1.8  Consensus size: 78

       1312 CTTCTGCGTG

                                                            *                
       1322 TTTGTTTCGCGTCCTCTCTTCTTCTCTGATTCATCTTCTTCAAGATTCTTGTTGTGTTTTTGTTT
          1 TTTGTTTCGCGTCCTCTCTTCTTCTCTGATTCATCTTCTTCAAGATTCCTGTTGTGTTTTTGTTT

                         
       1387 GTTTTTTCTTCCC
         66 GTTTTTTCTTCCC

                         *                                                   
       1400 TTTGTTTCGCGTCTTCTCTTCTTCTCTGATTCATCTTCTTCAAGATTCCTGTTGTGTTTTTGTTT
          1 TTTGTTTCGCGTCCTCTCTTCTTCTCTGATTCATCTTCTTCAAGATTCCTGTTGTGTTTTTGTTT

             
       1465 G
         66 G

       1466 GTTTATATTT


Statistics
Matches: 64,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  78   64  1.00

ACGTcount: A:0.07, C:0.22, G:0.14, T:0.57


Consensus pattern (78 bp):   
TTTGTTTCGCGTCCTCTCTTCTTCTCTGATTCATCTTCTTCAAGATTCCTGTTGTGTTTTTGTTT
GTTTTTTCTTCCC
Done.