Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006587.1 Corchorus olitorius cultivar O-4 contig06612, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1875
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34


Found at i:1141 original size:58 final size:58

Alignment explanation


    Indices: 1046--1155  Score: 159
    Period size: 58  Copynumber: 1.9  Consensus size: 58

       1036 ATTAATCAAA

                                                          *           
       1046 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTCGGACCGAGGCT
          1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGGCT

                *            *          * *                      
       1104 TATCGAGTGACATGTTTTTTTATTAGATTCCT-AAAAAAGACGTTTTAGGACC
          1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACC

       1156 AAGGTATGAT


Statistics
Matches: 46,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  58   32  0.70
  59   14  0.30

ACGTcount: A:0.32, C:0.15, G:0.19, T:0.35


Consensus pattern (58 bp):   
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAAGACGTTTTAGGACCGAGGCT
Done.