Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006590.1 Corchorus olitorius cultivar O-4 contig06615, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1873
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39


Found at i:1103 original size:11 final size:11

Alignment explanation


    Indices: 1087--1121  Score: 70
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       1077 TTTACAGTGC

                       
       1087 AACAAAAACAA
          1 AACAAAAACAA

                       
       1098 AACAAAAACAA
          1 AACAAAAACAA

                       
       1109 AACAAAAACAA
          1 AACAAAAACAA

              
       1120 AA
          1 AA

       1122 AACAGAAAAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   24  1.00

ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00


Consensus pattern (11 bp):   
AACAAAAACAA

Found at i:1140 original size:6 final size:6

Alignment explanation


    Indices: 1087--1122  Score: 58
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       1077 TTTACAGTGC

                                                        
       1087 AACAAA AAC-AA AACAAA AAC-AA AACAAA AACAAA AA
          1 AACAAA AACAAA AACAAA AACAAA AACAAA AACAAA AA

       1123 ACAGAAAAAC


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
   5   10  0.36
   6   18  0.64

ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00


Consensus pattern (6 bp):   
AACAAA
Done.