Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006591.1 Corchorus olitorius cultivar O-4 contig06616, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33


Found at i:571 original size:13 final size:13

Alignment explanation


    Indices: 553--578  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        543 AAGGTAACAA

                         
        553 CAAAAATCATCAC
          1 CAAAAATCATCAC

                         
        566 CAAAAATCATCAC
          1 CAAAAATCATCAC

        579 TCATGCCAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15


Consensus pattern (13 bp):   
CAAAAATCATCAC
Done.