Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000066.1 Corchorus olitorius cultivar O-4 contig00066, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 744

Length: 1240
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30


Found at i:820 original size:21 final size:21

Alignment explanation


    Indices: 787--826  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        777 CTCCAAGCAA

                    *             
        787 AAACATCTTTGAATTCTCTTAG
          1 AAACATCTGTGAATT-TCTTAG

                               
        809 AAAC-TCTGTGAATTTCTT
          1 AAACATCTGTGAATTTCTT

        827 TTTTTCCTCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    4  0.24
  21    9  0.53
  22    4  0.24

ACGTcount: A:0.30, C:0.17, G:0.10, T:0.42


Consensus pattern (21 bp):   
AAACATCTGTGAATTTCTTAG
Done.