Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006600.1 Corchorus olitorius cultivar O-4 contig06625, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40


Found at i:812 original size:26 final size:26

Alignment explanation


    Indices: 779--837  Score: 109
    Period size: 26  Copynumber: 2.3  Consensus size: 26

        769 TATGAAAAGT

                                      
        779 ACTTTTGGAAAAAACTTCGATTTAAA
          1 ACTTTTGGAAAAAACTTCGATTTAAA

                                    * 
        805 ACTTTTGGAAAAAACTTCGATTTAGA
          1 ACTTTTGGAAAAAACTTCGATTTAAA

                   
        831 ACTTTTG
          1 ACTTTTG

        838 TCTTATAATT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   32  1.00

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37


Consensus pattern (26 bp):   
ACTTTTGGAAAAAACTTCGATTTAAA
Done.