Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006606.1 Corchorus olitorius cultivar O-4 contig06631, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3092
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:2046 original size:11 final size:11

Alignment explanation


    Indices: 2030--2056  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       2020 GTATATGTAC

                       
       2030 CTTGATTTACA
          1 CTTGATTTACA

                       
       2041 CTTGATTTACA
          1 CTTGATTTACA

                 
       2052 CTTGA
          1 CTTGA

       2057 AGGTAAATAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44


Consensus pattern (11 bp):   
CTTGATTTACA
Done.