Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006608.1 Corchorus olitorius cultivar O-4 contig06633, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2362
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:1160 original size:18 final size:18

Alignment explanation


    Indices: 1137--1173  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1127 TTGGAAAACA

                               
       1137 CTTTTGATTC-TTTTTCAT
          1 CTTTTG-TTCATTTTTCAT

                              
       1155 CTTTTGTTCATTTTTCAT
          1 CTTTTGTTCATTTTTCAT

             
       1173 C
          1 C

       1174 AAACATGGAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  17    3  0.17
  18   15  0.83

ACGTcount: A:0.11, C:0.19, G:0.05, T:0.65


Consensus pattern (18 bp):   
CTTTTGTTCATTTTTCAT
Done.