Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006618.1 Corchorus olitorius cultivar O-4 contig06643, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2665
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32


Found at i:261 original size:22 final size:21

Alignment explanation


    Indices: 234--281  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

        224 TTTCAAATAA

                 *                
        234 GAAAAGGAAAATAAGA-AAAAT
          1 GAAAAAGAAAATAA-ATAAAAT

                      *          
        255 GAAAAAGAAATTAAATAAAAT
          1 GAAAAAGAAAATAAATAAAAT

                  
        276 GAAAAA
          1 GAAAAA

        282 AAAGGACTTA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  20    1  0.04
  21   23  0.96

ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12


Consensus pattern (21 bp):   
GAAAAAGAAAATAAATAAAAT
Done.