Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006623.1 Corchorus olitorius cultivar O-4 contig06648, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 949

Length: 1582
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33


Found at i:274 original size:21 final size:20

Alignment explanation


    Indices: 250--320  Score: 106
    Period size: 21  Copynumber: 3.4  Consensus size: 20

        240 CTTAGGCAAT

                         *       
        250 TCCAATGAGCTTGAAACCTTC
          1 TCCAATGAGCTTGGAA-CTTC

                                 
        271 TCCAATGAGCTTGGAAGCTTC
          1 TCCAATGAGCTTGGAA-CTTC

                                 
        292 TCCAATGAGCTTGGAACTTGC
          1 TCCAATGAGCTTGGAACTT-C

                    
        313 TCCAATGA
          1 TCCAATGA

        321 ACTCCTAGCA


Statistics
Matches: 47,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    3  0.06
  21   44  0.94

ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28


Consensus pattern (20 bp):   
TCCAATGAGCTTGGAACTTC
Done.