Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006625.1 Corchorus olitorius cultivar O-4 contig06650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1448
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39


Found at i:1322 original size:27 final size:29

Alignment explanation


    Indices: 1280--1340  Score: 92
    Period size: 27  Copynumber: 2.2  Consensus size: 29

       1270 ACCCTTATGT

                                         
       1280 TTTTATTTTTCGTTATTTTTCTTT-TT-C
          1 TTTTATTTTTCGTTATTTTTCTTTGTTAC

                                          
       1307 TTTTA-TTTTCGTTTATTTTTCTTTGTTAC
          1 TTTTATTTTTCG-TTATTTTTCTTTGTTAC

                 
       1336 TTTTA
          1 TTTTA

       1341 ATTGTGAATT


Statistics
Matches: 31,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
  26    6  0.19
  27   17  0.55
  28    2  0.06
  29    6  0.19

ACGTcount: A:0.10, C:0.10, G:0.05, T:0.75


Consensus pattern (29 bp):   
TTTTATTTTTCGTTATTTTTCTTTGTTAC
Done.