Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006627.1 Corchorus olitorius cultivar O-4 contig06652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1909
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34


Found at i:671 original size:16 final size:16

Alignment explanation


    Indices: 621--671  Score: 50
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        611 TAAGACTTTT

                            
        621 ATTAGTTTATATTATA
          1 ATTAGTTTATATTATA

               **   * *      
        637 ATTTTTTTTTGTTCA-A
          1 ATTAGTTTATATT-ATA

                            
        653 ATTAGTTTATATTATA
          1 ATTAGTTTATATTATA

               
        669 ATT
          1 ATT

        672 GAAATGGGTA


Statistics
Matches: 25,  Mismatches: 8, Indels: 4
        0.68            0.22        0.11

Matches are distributed among these distances:
  15    1  0.04
  16   23  0.92
  17    1  0.04

ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61


Consensus pattern (16 bp):   
ATTAGTTTATATTATA
Done.