Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006628.1 Corchorus olitorius cultivar O-4 contig06653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 916

Length: 1528
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.33


Found at i:909 original size:3 final size:3

Alignment explanation


    Indices: 901--1006  Score: 212
    Period size: 3  Copynumber: 35.3  Consensus size: 3

        891 AATTATATAT

                                                                           
        901 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                                                                           
        949 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                         
        997 ATA ATA ATA A
          1 ATA ATA ATA A

       1007 GAAAAGACAA


Statistics
Matches: 103,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3  103  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
ATA

Done.