Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000663.1 Corchorus olitorius cultivar O-4 contig00663, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30


Found at i:1385 original size:33 final size:33

Alignment explanation


    Indices: 1343--1466  Score: 203
    Period size: 33  Copynumber: 3.7  Consensus size: 33

       1333 CTACAACAGC

                                             
       1343 GATCTGCACTCGCAGCACCTGAGATTCAGTCGG
          1 GATCTGCACTCGCAGCACCTGAGATTCAGTCGG

                                            *
       1376 GATCTGCACTCGCAGCACCTGAGATTCAGTCGC
          1 GATCTGCACTCGCAGCACCTGAGATTCAGTCGG

            *                       *         
       1409 AATCTGCACTCGCAGCACCTGAGACTCAGTCGGG
          1 GATCTGCACTCGCAGCACCTGAGATTCAGTC-GG

                   *                
       1443 GATCTGCGCTCGCAGCACCTGAGA
          1 GATCTGCACTCGCAGCACCTGAGA

       1467 AGAAT


Statistics
Matches: 84,  Mismatches: 6, Indels: 1
        0.92            0.07        0.01

Matches are distributed among these distances:
  33   61  0.73
  34   23  0.27

ACGTcount: A:0.22, C:0.32, G:0.27, T:0.19


Consensus pattern (33 bp):   
GATCTGCACTCGCAGCACCTGAGATTCAGTCGG
Done.