Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006631.1 Corchorus olitorius cultivar O-4 contig06656, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1093
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41


Found at i:1074 original size:28 final size:31

Alignment explanation


    Indices: 1016--1077  Score: 94
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       1006 TTCAATATTT

                              *            
       1016 ATTTTTTGTGTATTATTAGTATATAACATTA
          1 ATTTTTTGTGTATTATTAATATATAACATTA

                                           
       1047 ATTTTTTGTGTATTA-TAATA-ATAA-ATTA
          1 ATTTTTTGTGTATTATTAATATATAACATTA

               
       1075 ATT
          1 ATT

       1078 ATAGTTTGGA


Statistics
Matches: 30,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  28    7  0.23
  29    4  0.13
  30    4  0.13
  31   15  0.50

ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55


Consensus pattern (31 bp):   
ATTTTTTGTGTATTATTAATATATAACATTA
Done.