Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000664.1 Corchorus olitorius cultivar O-4 contig00664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:528 original size:17 final size:17

Alignment explanation


    Indices: 506--575  Score: 95
    Period size: 17  Copynumber: 4.1  Consensus size: 17

        496 AATGTTGGTG

                     *       
        506 TTAGTATTTGGTTAACA
          1 TTAGTATTTAGTTAACA

                        *    
        523 TTAGTATTTAGTGAACA
          1 TTAGTATTTAGTTAACA

             *        *    * 
        540 TAAGTATTTAATTAAAA
          1 TTAGTATTTAGTTAACA

                             
        557 TTAGTATTTAGTTAACA
          1 TTAGTATTTAGTTAACA

              
        574 TT
          1 TT

        576 TATTTGATCT


Statistics
Matches: 44,  Mismatches: 9, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  17   44  1.00

ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46


Consensus pattern (17 bp):   
TTAGTATTTAGTTAACA

Done.