Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006640.1 Corchorus olitorius cultivar O-4 contig06665, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1231
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34


Found at i:160 original size:2 final size:2

Alignment explanation


    Indices: 149--184  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

        139 ATTTCGTGTT

                                                                    
        149 TA TA -A TA TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        185 GGAGTATCAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   1    2  0.06
   2   30  0.94

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Done.